Approximate Bayesian Computation |
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Validate individual components of an ABC model |
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Simulate data for ABC inference using specified priors |
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Perform ABC on data generated by |
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Grid-based inference |
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Simulate values of summary statistics across a parameter grid |
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Genetic algorithms |
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Compute the fitness of the given parameter set against observed data |
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Run genetic algorithm (GA) inference of the parameters of the given model |
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ABC cross-validation and posterior checks |
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Unpack demografr object into individual components of the abc package |
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Perform cross-validation using the |
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Perform selection between different ABC models |
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Peform a test of the goodness-of-fit of a given model |
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Generate summary statistics from the inferred posterior distribution of parameters |
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Unnest the predicted values of a given statistic from the simulated data |
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Plot the results of a posterior predictive check for a given summary statistic |
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Analysis of ABC inference results |
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Extract table of estimated model parameters |
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Extract inferred posterior(s) as a standard data frame |
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Plot prior distribution(s) |
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Plot posterior distribution of given parameters |
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Plot diagnostics of posterior distribution(s) |
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Plot histogram of posterior distribution(s) |
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Helper functions |
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Apply summary statistic functions to the simulated data |
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Simulate a single tree sequence from the given inference setup |
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Combine multiple individual ABC simulation runs into one |
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Sample value from a given prior sampling formula object |