Function reference • admixr

Admixture statistics
`f4ratio()` `d()` `f4()` `f3()`	Calculate the D, f4, f4-ratio, or f3 statistic.
`qpWave()`	Find the most likely number of ancestry waves using the qpWave method.
`qpAdm()`	Calculate ancestry proportions in a set of target populations.
qpAdm model exploration
`qpAdm_rotation()`	Fit qpAdm models based on the rotation strategy described in Harney et al. 2020 (bioRxiv)
`qpAdm_filter()`	Filter qpAdm rotation results for only 'sensible' models
Examining output log information
`loginfo()`	Print the full log output of an admixr wrapper to the console.
Data processing and filtering
`eigenstrat()`	EIGENSTRAT data constructor
`filter_bed()`	Filter EIGENSTRAT data based on a given BED file
`transversions_only()`	Remove transversions (C->T and G->A substitutions)
`relabel()`	Change labels of populations or samples
`reset()`	Reset modifications to an EIGENSTRAT object
`merge_eigenstrat()`	Merge two sets of EIGENSTRAT datasets
`count_snps()`	Count the number/proportion of present/missing sites in each sample
Reading/writing EIGENSTRAT data
`read_ind()` `read_snp()` `read_geno()`	Read an EIGENSTRAT ind/snp/geno file.
`write_ind()` `write_snp()` `write_geno()`	Write an EIGENSTRAT ind/snp/geno file.
`read_output()`	Read an output file from one of the ADMIXTOOLS programs.
Utility functions
`download_data()`	Download example SNP data.
`print(<EIGENSTRAT>)`	EIGENSTRAT print method
`print(<admixr_result>)`	Print out the admixr result object (dataframe or a list) without showing the hidden attributes.

Reference