Set 'exclude' and 'group' modifications of snp and ind files, effectively resetting the dataset into its original state.
reset(data)
EIGENSTRAT data object.
EIGENSTRAT data S3 object.
if (FALSE) # download an example genomic data set and prepare it for analysis
snps <- eigenstrat(download_data(dirname = tempdir()))
# group individual samples into larger populations, creating a new
# EIGENSTRAT R object
new_snps <- relabel(
snps,
European = c("French", "Sardinian"),
African = c("Dinka", "Yoruba", "Mbuti", "Khomani_San"),
Archaic = c("Vindija", "Altai", "Denisova")
)
#> Error in eval(expr, envir, enclos): object 'snps' not found
# remove the population grouping in the previous step - this
# results in the same EIGENSTRAT object tht we started with
original_snps <- reset(new_snps)
#> Error in eval(expr, envir, enclos): object 'new_snps' not found