EIGENSTRAT data produced by this function can be used by the admixr R package (https://bodkan.net/admixr).
ts_eigenstrat(ts, prefix, chrom = "chr1", outgroup = NULL)
EIGENSTRAT trio prefix
The name of the chromosome in the EIGENSTRAT snp file (default "chr1")
Should a formal, artificial outgroup be added? If
Object of the class EIGENSTRAT created by the admixr package
In case an outgroup was not formally specified in a slendr model which
generated the tree sequence data, it is possible to artificially create an
outgroup sample with the name specified by the
which will carry all ancestral alleles (i.e. value "2" in a geno file
for each position in a snp file).