Calculate diversity in given sets of individuals

ts_diversity(
ts,
sample_sets,
mode = c("site", "branch", "node"),
windows = NULL,
span_normalise = TRUE
)

## Arguments

ts pyslim.SlimTreeSequence object A list (optionally a named list) of character vectors with individual names (one vector per set) The mode for the calculation ("sites" or "branch") Coordinates of breakpoints between windows. The first coordinate (0) and the last coordinate (equal to ts\$sequence_length) are added automatically) Divide the result by the span of the window? Default TRUE, see the tskit documentation for more detail.

## Value

For each set of individuals either a single diversity value or a vector of diversity values (one for each window)